Ever wondered why being in nature feels so good? In the last few years, science has started to explain why.

Beyond boosting your mood, spending time outdoors is increasingly linked to better physical health – particularly through its impact on the gut microbiome. Emerging research is uncovering a fascinating connection between the microbes in our bodies and those found in natural environments. 

A microbiome is a community of microorganisms, including bacteria, viruses, fungi and their genes. They can live in a specific environment, like the human body, soil or water. 

What is a healthy gut microbiome?

Gut microbes are crucial in many aspects of human health. A healthy gut microbiome is a diverse and balanced community of microorganisms in the intestines that supports immunity, digestion and even mental health. Around 70–80% of our immune cells are present in the gut and research suggests that having more diverse gut microbiomes is associated with a lower risk of some chronic conditions including asthma1 and heart disease2. A key marker of good gut health is the diversity of microbiomes in your gut. 

Did you know?

More than one trillion microbes live in a tree trunk. That's your sign to give a tree a big hug on your next walk!

How does being in nature improve your gut health?

When we spend time in nature, we are exposed to a wide variety of environmental microbes. They can be found in soils, plants, water and air. Interestingly, soil contains approximately the same number of active microorganisms per gram of material as the human gut.

Microbes from the environment can enter our body in several ways – through skin contact or even the food we eat. Once introduced, they diversify the gut microbiome and help outcompete microbes that carry disease such as viruses. 

What does the research say?

Touching soil

A growing body of research shows that time outdoors, especially contact with soil, can have a powerful impact on children’s gut microbiome. 

Studies from a research organisation in Finland have demonstrated that microbiologically rich environments, such as forest floors and soils, can improve both immune function and gut health in children. One experiment compared kindergartens with green play areas to those with concrete or asphalt play areas3. They found that kindergartens with green play areas saw measurable changes in children’s skin and gut microbiota within just 28 days, alongside improvements in immune system function. These findings suggest that regular contact with nature could help reduce the risk of immune-related conditions such as type 1 diabetes and allergies.

Another research study by the same organisation showed that children who spent just 40 minutes a day playing in a sandbox filled with microbially rich soil showed improved immune regulation in as little as two weeks4. Researchers observed beneficial changes in skin microbiomes, helping to prevent imbalances in immune defences.

The benefits don’t stop there. A 10-week play and grow program, where children took part in 90 minutes of regular, outdoor, messy play led to significant changes in the gut microbiome diversity. Researchers also noted reduced levels of perceived stress. This study was one of the first to explore how nature-based activities influence the gut-brain axis – specifically the relationship between gut microbiome, fecal serotonin and psychosocial behaviours in children – highlighting the potential link between time in nature and mental wellbeing. 

Similar patterns have been observed in everyday life. For example, research looking at families who garden regularly versus families who don’t found that gardeners tend to have more diverse gut microbiomes, generally associated with better overall health and mental wellbeing6. While factors like diet and lifestyle also play a role, the findings reinforce the value of regular contact with natural environments. 

Breathing in the air

It’s not just what we touch that matters, what we breathe may play a role too. 

An article from 2025 suggests that oxygen should be considered a critical nutrient for human health7. It also highlights how airborne microbes may help replenish beneficial bacteria in our airways, some of which can travel to the gut and support the microbiome there. While this area of research is still developing, it raises an intriguing idea: simply breathing in natural environments could contribute to a healthier gut. 

Sun exposure

Sunlight may also influence the gut microbiome. 

Research has shown that vitamin D from narrowband UVB light and supplements can increase the biodiversity of the gut microbiome and amount of beneficial bacteria8. One study compared these findings with data from the Yanomami, a hunter-gatherer community with high natural sun exposure, and found notable similarities in gut microbiome9. This suggests that regular time in the sun may play a role in shaping a healthier gut microbiome.  

Does being in nature benefit your mental health?

There is strong evidence that spending time in nature can support mental health. When viewed through the lens of gut health, the connection becomes more compelling. A diverse, healthy gut microbiome has been linked to improved mood and overall wellbeing. 

The gut-brain axis

This link exists because the gut and brain are closely connected through what’s known as the gut-brain axis. Trillions of microbes in our digestive system interact with the nervous system and produce many of the same neurochemicals, such as serotonin, dopamine and gamma-aminobutyric acid (GABA), that help regulate mood, sleep and emotion10,11. They also influence inflammation and immune responses, both of which are linked to anxiety and depression. 

Can soil microbes improve mood?

Research has explored a soil bacterium called Mycobacterium vaccae which stimulates the release of serotonin when we’re exposed to it12. This boost of serotonin acts as an antidepressant. Further research found that people living with cancer who were given a non-live version of the bacterium reported improvements in their quality of life. 

Another research project found that soil containing a microbe called Streptomyces rimosus is released in the air and inhaled by humans13. Researchers found that it can improve mood and reduce symptoms of depression by enhancing relaxation, reducing stress and changing body chemistry. While this area is still emerging, it points to another way our environment may influence how we feel. 

What are the threats to a healthy gut microbiome?

As populations become increasingly urbanised, our lifestyles are shifting further away from nature. It’s estimated that within the next few decades, around two-thirds of the global population will live in urban areas. This shift may limit our exposure to beneficial microbes and, in turn, influence the diversity of our gut microbiome.

Environmental microbial diversity itself is also under pressure. Soil health, for example, is degrading with industrial agricultural practices. Since soil is one of the richest sources of microbial life, changes to its composition could reduce the variety of beneficial microbes we encounter. While research on this is ongoing, scientists suggest that reduced exposure to diverse environmental microbes may be linked to changes in immune function, increased inflammation and a higher risk of certain chronic conditions. 

Nature as nourishment

The evidence is increasingly clear: spending time outdoors in biodiverse environments can positively influence our gut microbiome, immune system and mental wellbeing. These benefits have also been recognised by the NHS, which has introduced ‘green prescriptions’ to encourage people to connect with nature as part of improving mental and physical health. 

So the next time you’re walking through the woods, digging in the garden or simply sitting in the sun, remember these small moments in nature could be supporting your gut health.

At the same time, increasing urbanisation and reduced access to green space pose a growing challenge. By protecting, restoring and creating woods, we are protecting our own health. 

1. Valverde-Molina, J. and García-Marcos, L. (2023). Microbiome and asthma: microbial dysbiosis and the origins, phenotypes, persistence, and severity of asthma. Nutrients, 15(3), p.486. Available at: https://doi.org/10.3390/nu15030486

2. Trehan, S., Singh, G., Bector, G., Jain, P., Mehta, T., Goswami, K., Chawla, A., Jain, A., Puri, P. and Garg, N. (2024). Gut dysbiosis and cardiovascular health: a comprehensive review of mechanisms and therapeutic potential. Cureus, 16(8), e67010. Available at: https://doi.org/10.7759/cureus.67010

3. Roslund, M.I., Puhakka, R., Grönroos, M., Nurminen, N., Oikarinen, S., Gazali, A.M., Cinek, O., Kramná, L., Siter, N., Vari, H.K., Soininen, L., Parajuli, A., Rajaniemi, J., Kinnunen, T., Laitinen, O.H., Hyöty, H., Sinkkonen, A. and Adele Research Group. (2020). Biodiversity intervention enhances immune regulation and health-associated commensal microbiota among daycare children. Science Advances, 6(42), p.eaba2578. Available at: https://doi.org/10.1126/sciadv.aba2578

4. Roslund, M.I., Parajuli, A., Hui, N., Puhakka, R., Grönroos, M., Soininen, L., Nurminen, N., Oikarinen, S., Cinek, O., Kramná, L., Schroderus, A.M., Laitinen, O.H., Kinnunen, T., Hyöty, H., Sinkkonen, A. (2022). A placebo-controlled double-blinded test of the biodiversity hypothesis of immune-mediated diseases: environmental microbial diversity elicits changes in cytokines and increase in T regulatory cells in young children. Ecotoxicology and Environmental Safety, 242, 113900. Available at: https://doi.org/10.1016/j.ecoenv.2022.113900

5. Sobko, T., Liang, S., Cheng, W.H.G. and Tun, H.M. (2020). Impact of outdoor nature-related activities on gut microbiota, fecal serotonin, and perceived stress in preschool children: the Play&Grow randomized controlled trial. Scientific Reports, 10(1), 21993. Available at: https://doi.org/10.1038/s41598-020-78642-2

6. Brown, M.D., Shinn, L.M., Reeser, G., Browning, M., Schwingel, A., Khan, N.A. and Holscher, H.D. (2022). Fecal and soil microbiota composition of gardening and non-gardening families. Scientific Reports, 12(1), 1595. Available at: https://doi.org/10.1038/s41598-022-05387-5

7. Fayet-Moore, F. and Robinson, S.R. (2024). A breath of fresh air: perspectives on inhaled nutrients and bacteria to improve human health. Advances in Nutrition, 15(12), 100333. Available at: https://doi.org/10.1016/j.advnut.2024.100333.

8. Bosman, E.S., Albert, A.Y., Lui, H., Dutz, J.P. and Vallance, B.A. (2019). Skin exposure to narrow band ultraviolet (UVB) light modulates the human intestinal microbiome. Frontiers in Microbiology, 10, p.2410. Available at: https://doi.org/10.3389/fmicb.2019.02410.

9. Conteville, L.C. and Vicente, A.C.P. (2020). Skin exposure to sunlight: a factor modulating the human gut microbiome composition. Gut Microbes, 11(5), pp.1135–1138. Available at: https://doi.org/10.1080/19490976.2020.1745044.

10. Lowry, C.A., Smith, D.G., Siebler, P.H., Schmidt, D., Stamper, C.E., Hassell, J.E., Yamashita, P.S., Fox, J.H., Reber, S.O., Brenner, L.A., Hoisington, A.J., Postolache, T.T., Kinney, K.A., Marciani, D., Hernandez, M., Hemmings, S.M.J., Malan-Muller, S., Wright, K.P., Knight, R., Raison, C.L. and Rook, G.A.W. (2016). The microbiota, immunoregulation, and mental health: implications for public health. Current Environmental Health Reports, 3(3), pp.270–286. Available at: https://doi.org/10.1007/s40572-016-0100-5.  

11. Deans, E. (2016). Microbiome and mental health in the modern environment. Journal of Physiological Anthropology, 36, p.1. Available at: https://doi.org/10.1186/s40101-016-0101-y

12. Lowry, C.A., Hollis, J.H., de Vries, A., Pan, B., Brunet, L.R., Hunt, J.R.F., Paton, J.F.R., van Kampen, E., Knight, D.M., Evans, A.K., Rook, G.A.W. and Lightman, S.L. (2007). Identification of an immune-responsive mesolimbocortical serotonergic system: potential role in regulation of emotional behavior. Neuroscience, 146(2), pp.756–772. Available at: https://doi.org/10.1016/j.neuroscience.2007.01.067

13. Kim, R., Yang, S., Choong Hwan, L. and Park, S.-A. (2025). Horticultural activity in soil inoculated with Streptomyces rimosus improved depressive mood with altered electroencephalogram and serum metabolism in adults. Scientific Reports, 15, 2197. Available at: https://doi.org/10.1038/s41598-024-79159-8

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